Predicting miRNA-disease interaction based on recommend method

Abstract

Purpose

MicroRNAs (miRNAs) have been proved to be a significant type of non-coding RNAs related to various human diseases. This paper aims to identify the potential miRNA–disease interactions.

Design/methodology/approach

A computational framework, MDIRM is presented to predict miRNAs-disease interactions. Unlike traditional approaches, the miRNA function similarity is calculated by miRNA–disease interactions. The k-mean method is further used to cluster miRNA similarity network. For miRNAs in the same cluster, their similarities are enhanced, as the miRNAs from the same cluster may be reliable. Further, the potential miRNA–disease association is predicted by using recommend method.

Findings

To evaluate the performance of our model, the fivefold cross validation is implemented to compare with two state-of-the-art methods. The experimental results indicate that MDIRM achieves an AUC of 0.926, which outperforms other methods.

Originality/value

This paper proposes a novel computational method for miRNA–disease interaction prediction based on recommend method. Identifying the relationship between miRNAs and diseases not only helps us better understand the disease occurrence and mechanism through the perspective of miRNA but also promotes disease diagnosis and treatment.

Citation

Chen, Q., Zhao, Z., Lan, W., Zhang, R. and Liang, J. (2020), "Predicting miRNA-disease interaction based on recommend method", Information Discovery and Delivery, Vol. 48 No. 1, pp. 35-40. https://doi.org/10.1108/IDD-04-2019-0026